Sexually Transmitted Infections Associated With Urethritis, Cervicitis, and PID

Sexually Transmitted Infections Associated With Urethritis, Cervicitis, and PID

This Clinical Focus covers laboratory tests that help diagnose, screen for, and manage sexually transmitted infections associated with urethritis, cervicitis, and PID.

Sexually Transmitted Infections Associated With Urethritis, Cervicitis, and PID: Laboratory Testing for Screening, Diagnosis, and Management

Clinical Focus

 

Sexually Transmitted Infections Associated With Urethritis, Cervicitis, and Pelvic Inflammatory Disease

Laboratory Testing for Screening, Diagnosis, and Management

 

Clinical background [return to contents]

Urethritis and cervicitis are inflammatory conditions that are often caused by sexually transmitted infections (STIs) of the urogenital tract. Pelvic inflammatory disease (PID) occurs when pathogens ascend past the cervix and infect the endometrium, fallopian tubes, ovaries, or pelvis. PID is one of the most serious manifestations of untreated STIs.

STIs can be difficult to identify because their signs and symptoms are not specific to the causative pathogen. Therefore, individuals with urethritis, cervicitis, or PID should be tested for common STIs so that they can receive appropriate, timely treatment.1 Since many of these STIs can also be asymptomatic, regular screening to identify STIs can help prevent urethritis, cervicitis, and PID among people at increased risk.1 

Substantial proportions of urethritis, cervicitis, and PID cases are caused by Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis, or Mycoplasma genitalium.1 All 4 of these pathogens are common among young adults in the United States, especially young women at high risk for STIs.2,3 Additional infectious and endogenous pathogens are associated with urogenital tract inflammation, such as Ureaplasma species, Mycoplasma hominis, herpes simplex virus (HSV), and constituents of the vaginal flora.1 

The Centers for Disease Control and Prevention (CDC) provides testing recommendations for STIs commonly associated with urethritis, cervicitis, and PID (Table 1).1 Testing for certain comorbid STIs is indicated for individuals with a diagnosis of urethritis, cervicitis, or PID. For testing options for these STIs, see

Table 1. Testing Recommendations for STIs Commonly Associated With Urethritis, Cervicitis, and PIDa [return to contents]

Condition

Testing recommendations to identify causative STIs1 

Additional testing recommendations for patients with the indicated diagnosis1 

CT/NG

T vaginalis

M genitalium

Bacterial vaginosis

HIV and/or Syphilis

Urethritis

  • Recommended
  • Considered in high-prevalence settings, when a partner is infected, or for persistent or recurrent disease
  • Recommended for persistent or recurrent disease

N/A

  • Recommended

Cervicitis

  • Recommended
  • Recommended
  • Considered based on clinical presentation
  • Recommended for persistent or recurrent disease
  • Recommended
  • Recommended

PID

  • Recommended
  • Not recommended
  • Considered based on clinical presentation
  • Not recommended
  • Recommended
CT/NG, C trachomatis/N gonorrhoeae; N/A, not applicable; PID, pelvic inflammatory disease.
a This is not intended as a comprehensive list of testing recommendations. Refer to guidelines for all current recommendations.

 

This Clinical Focus provides an overview of laboratory tests useful in screening, diagnosis, and management of STIs commonly associated with urethritis, cervicitis, and PID. This information is not intended as medical advice. Test selection and interpretation, diagnosis, and patient management decisions should be based on the physician’s education, clinical expertise, and assessment of the patient.

Individuals suitable for testing [return to contents]

  • Individuals who should be screened for C trachomatis, N gonorrhoeae, or T vaginalis infections (see Screening subsection)
  • Individuals with urethritis, cervicitis, or PID (see Diagnosis subsection)
  • Individuals with confirmed C trachomatis, N gonorrhoeae, T vaginalis, or M genitalium infections (see Follow-up testing subsection)

Test availability [return to contents]

To aid with screening, diagnosis, and management, Quest Diagnostics offers panels of nucleic acid amplification tests (NAATs) that concurrently test for common infectious causes of urethritis, cervicitis, and PID (Table 2). In addition, Quest offers tests for individual microorganisms from various specimen types, confirmatory testing using alternative gene targets,4 tests and panels targeting genital mycoplasmas, and STI panels for individuals at high risk (Table 3).

Table 2. NAAT Panels for Identifying the Cause(s) of Urethritis, Cervicitis, and PIDa [return to contents]

Test code

Test name (component tests and codes)

C trachomatis

N gonorrhoeae

T vaginalis

M genitalium

Ureaplasma species

36962

Sexually-Transmitted Infections (STIs) Cervicitis Panelb

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA (19550), and Mycoplasma genitalium, rRNA, TMA (91475).

 

38288

Sexually-Transmitted Infections (STIs) Male Urethritis Panel, Expandedb,c,d

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA, males (90801), Mycoplasma genitalium, rRNA, TMA (91475), and SureSwab® Ureaplasma species, real-time PCR (91476).

36964

Sexually-Transmitted Infections (STIs) Male Urethritis Panelb,c

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA, males (90801), and Mycoplasma genitalium, rRNA, TMA (91475).

 

36965

Sexually-Transmitted Infections (STIs) Pelvic Inflammatory Disease(PID) Panelb

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA (19550), and Mycoplasma genitalium, rRNA, TMA(91475).

 

NAAT, nucleic acid amplification test; PID, pelvic inflammatory disease; STI, sexually transmitted infections; TMA, transcription-mediated amplification.
a This test listing is not intended to be comprehensive. For additional testing options, consult TestDirectory.QuestDiagnostics.com.
b Panel components may be ordered separately.
c The analytical performance characteristics of this assay have been determined by Quest Diagnostics. The modifications have not been cleared or approved by the FDA. This assay has been validated pursuant to the CLIA regulations and is used for clinical purposes.
d This test was developed and its analytical performance characteristics have been determined by Quest Diagnostics. It has not been cleared or approved by FDA. This assay has been validated pursuant to the CLIA regulations and is used for clinical purposes.

 

Table 3. Individual Laboratory Tests and Panels for STIs Commonly Associated With Urethritis, Cervicitis, and PIDa [return to contents]

Test code

Test name (component tests and test codes)

Clinical use

Chlamydia trachomatis

16505

Chlamydia trachomatis RNA, TMA, Rectalb

Detect infection with C trachomatis

70048

Chlamydia trachomatis RNA, TMA, Throatb

11361

Chlamydia trachomatis RNA, TMA, Urogenital

91046

Chlamydia trachomatis, TMA (Alternate Target), Rectalc

15031

Chlamydia trachomatis, TMA (Alternate Target), Urogenital

Neisseria gonorrhoeae

480

Neisseria gonorrhoeae (GC) Culture

Detect infection with N gonorrhoeae

16504

Neisseria gonorrhoeae RNA, TMA, Rectalb

70049

Neisseria gonorrhoeae RNA, TMA, Throatb

11362

Neisseria gonorrhoeae RNA, TMA, Urogenital

90990

Neisseria gonorrhoeae, TMA (Alternate Target), Rectalc

15033

Neisseria gonorrhoeae, TMA (Alternate Target), Urogenital

Trichomonas vaginalis

19550

Trichomonas vaginalis RNA, Qualitative, TMA

Detect infection with T vaginalis

90801

Trichomonas vaginalis RNA, Qualitative, TMA, Malesb

90521

Trichomonas vaginalis RNA, Qualitative, TMA, Pap Vial

Genital mycoplasmas

91475

Mycoplasma genitalium, rRNA, TMA

Detect infection with M genitalium

91477

Mycoplasma/Ureaplasma Panel, PCRc,d

Includes Mycoplasma genitalium, rRNA, TMA(91475), SureSwab®, Mycoplasma hominis, real-time PCR (91474), and SureSwab®, Ureaplasma species, real-time PCR (91476).c

Detect infection with M genitalium, M hominis, U urealyticum, or U parvum

STI Panels

11363

Chlamydia/Neisseria gonorrhoeae RNA, TMA, Urogenital

Detect infections with C trachomatis and N gonorrhoeae; screen individuals at increased risk for C trachomatis and N gonorrhoeae

91773

Chlamydia/Neisseria gonorrhoeae RNA, TMA with Reflex to Alternate Target, Urogenitale

Includes reflex to Chlamydia trachomatis, TMA (Alternate Target), urogenital (15031) and Neisseria gonorrhoeae, TMA (alternate target), urogenital (15033).

Detect infections with C trachomatis and N gonorrhoeae followed by confirmatory testing for positive results

36963

Sexually-Transmitted Infections (STIs) Increased Risk Paneld

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, Urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA (19550), and Mycoplasma genitalium, rRNA, TMA(91475).

Detect common STIs in individuals at increased risk

PCR, polymerase chain reaction; STI, sexually transmitted infections; TMA, transcription-mediated amplification.
a This test listing is not intended to be comprehensive. For additional testing options, consult TestDirectory.QuestDiagnostics.com.
b The analytical performance characteristics of this assay have been determined by Quest Diagnostics. The modifications have not been cleared or approved by the FDA. This assay has been validated pursuant to the CLIA regulations and is used for clinical purposes.
c This test was developed and its analytical performance characteristics have been determined by Quest Diagnostics. It has not been cleared or approved by FDA. This assay has been validated pursuant to the CLIA regulations and is used for clinical purposes.
d Panel components may be ordered separately.
e Reflex tests are performed at an additional charge and are associated with an additional CPT® code.

Test Selection and Interpretation [return to contents]

Screening

Timely detection and effective treatment of asymptomatic STIs that can cause urethritis and cervicitis are important for preventing PID and other complications. Therefore, the CDC, the United States Preventive Services Task Force (USPSTF), the Infectious Diseases Society of America (IDSA), and the American Society for Microbiology (ASM) have screening recommendations for STIs commonly associated with urethritis, cervicitis, and PID in appropriate populations (Table 4 and 5).1,5,6 Screening recommendations should be adapted based on anatomy and reported sexual behaviors.1,5 

Table 4. Screening Guidelines for Chlamydia and Gonorrheaa [return to contents]

Population

Screening interval1,5,6,b

Sexually active women

 

 

<25 years of age

Yearly

 

≥25 years of age with risk factors:

  • New sex partner
  • >1 sex partner
  • Sex partner with concurrent partners
  • Sex partner with an STI
  • Inconsistent condom use when not in mutually monogamous relationship
  • Previous or current STI
  • History of transactional sex
  • History of incarceration

Yearly

Pregnant individuals <25 years of age or ≥25 years of age with risk factors

1st prenatal visit and 3rd trimester

Sexually active MSM

Yearly, every 3-6 months if high risk

Sexually active individuals with HIV

At initial HIV-related visit, then yearly

Women <35 and men <30 years of age in correctional facilities

At intake

MSM, men who have sex with men; STI, sexually transmitted infection.
a This is not intended as a comprehensive list of screening recommendations. Refer to guidelines for all current recommendations.
b More frequent screening may be appropriate for some people.1 

 

Table 5. Screening Guidelines for Trichomoniasisa [return to contents]

Population

Screening interval1,5 

Sexually active women with HIV

At initial HIV-related visit, then yearly

Women <35 of age in correctional facilities

At intake

a This is not intended as a comprehensive list of screening recommendations. Refer to guidelines for all current recommendations.

 

In high-prevalence settings, screening sexually active young men for C trachomatis can be considered.1 Quest offers individual NAATs for screening for C trachomatis (test code 11361) and N gonorrhoeae individually (test code 11362) or concurrent CT/NG NAAT screening for both organisms (test code 11363).

Screening for trichomoniasis can be considered for women at high risk for infection and for individuals in high-prevalence settings.1 Quest offers NAATs for screening for trichomoniasis (test codes 19550, 90801, and 90521).

Currently, routine screening for M genitalium is not recommended. However, testing may be warranted depending on the clinical presentation, such as persistent urethritis.

Diagnosis

Individuals with urethritis, cervicitis, or PID should be tested for causative pathogens and other common STIs.1 Identifying a causative pathogen helps inform treatment decisions and prevent complications, recurrent disease, and STI transmission.1

The CDC, the USPSTF, the IDSA, and the ASM recommend NAATs to detect C trachomatis and N gonorrhoeae in urogenital and extragenital specimens.1,5,6 Both the CDC and IDSA prefer NAATs for detecting M genitalium because isolating this pathogen by culture is prohibitively difficult.1,6 The CDC recommends highly sensitive and specific diagnostic tests to detect T vaginalis.1 NAATs for T vaginalis can also be performed using the same specimen that is collected for C trachomatis and N gonorrhoeae testing.6 Quest offers diagnostic NAATs to detect C trachomatis, N gonorrhoeae, T vaginalis, and M genitalium from various types of specimens (Table 3).

Positive results from NAATs indicate infection with the specified organism, while negative results indicate that the organism was not detected. False-positive results may occur from performing NAAT too soon after cessation of therapy owing to the presence of nucleic acids from dead organisms. False-negative results could occur when there are too few organisms in the specimen, below the assay detection limit.

Urethritis

The CDC recommends testing men with clinical signs of urethritis for both C trachomatis and N gonorrhoeae.1 Urethritis is conventionally divided into gonococcal and non-gonococcal urethritis (NGU) based on point-of-care Gram-stain microscopy, which can identify urethral inflammation. Microscopy is highly specific for gonococcal urethritis based on visualization of N gonorrhoeae organisms.1 However, if microscopy is not available or if a diagnosis of NGU is made, NAATs should be used to test for C trachomatis and N gonorrhoeae (Table 3).1 

In high-prevalence settings, testing for T vaginalis should also be considered; in low-prevalence settings, testing for T vaginalis (test code 90801) may be appropriate if symptoms persist after treatment or if specific exposure is suspected.1 M genitalium can also cause urethritis and is a common reason for the failure of presumptive treatment for NGU. In cases of persistent or recurrent urethritis, CDC guidelines recommend testing for M genitalium infection (test code 91475).1 

Guidelines indicate that men may be tested for other bacterial and viral causes of urethritis if symptoms persist after treatment, or if exposure to a specific pathogen is suspected.1 Although genital mycoplasmas have long been associated with urethritis, evidence that Ureaplasma species and M hominis are pathogenic has been mixed.1 HSV-1 and HSV-2 can also cause urogenital inflammation; 15% to 30% of men with primary HSV infections develop urethritis.7 While urethritis caused by HSV can usually be distinguished by the presence of characteristic skin lesions, HSV can also cause urethritis in the absence of these lesions.

Quest offers a urethritis panel (test code 36964) that includes NAATs for 4 of the most common causes of urogenital inflammation: C trachomatis, N gonorrhoeae, T vaginalis, and M genitalium. An additional urethritis panel (test code 38288) allows for testing these STIs in combination with Ureaplasma species. Separate NAATs are also available for detecting genital mycoplasmas (Table 3).

For HSV-1 and HSV-2 testing options, refer to Genital Herpes: Laboratory Support of Diagnosis and Management | Clinical Focus | Quest Diagnostics.

Cervicitis

Guidelines indicate that women with cervicitis should be tested for N gonorrhoeae, C trachomatis, and T vaginalis.1 C trachomatis and N gonorrhoeae are well-known causes of cervicitis. T vaginalis is usually associated with vaginal symptoms, but up to 50% of women with T vaginalis infection also develop characteristic cervical inflammation (colpitis macularis).8 Accumulating evidence also suggests that M genitalium can cause cervicitis.1,9 Testing for M genitalium can be considered, and in cases of persistent or recurrent cervicitis, it is recommended.1 

Other bacteria and viruses may cause cervicitis.1 Ureaplasma species and M hominis have been associated with cervicitis, but they can also be found in the reproductive tract of healthy women.9 Whether these organisms cause inflammation independent of bacterial vaginosis or concurrent infections has not been resolved. Thus, testing for Ureaplasma species and M hominis is not recommended.1 Both HSV-1 and HSV-2 are also associated with cervicitis,9 and 15% to 20% of women with primary HSV-2 infections develop cervicitis.10 However, guidelines do not indicate HSV testing.1 

Quest offers a cervicitis panel (test code 36962) that includes NAATs for 4 of the most common causes of urogenital inflammation: C trachomatis, N gonorrhoeae, T vaginalis, and M genitalium.

Pelvic inflammatory disease

Guidelines indicate that women with suspected PID should be given empiric therapy but should also be tested for C trachomatis and N gonorrhoeae to help direct pathogen-specific follow-up testing and care.1 Importantly, confirming a C trachomatis or N gonorrhoeae infection increases the specificity of a PID diagnosis, which is otherwise based on minimal criteria to reduce the number of missed cases.1 

T vaginalis has been associated with PID in several studies.11 At present, however, a causal relationship has not been established11 and guidelines do not indicate T vaginalis testing for women with PID.1 Several prospective studies have indicated associations between M genitalium and PID independent of C trachomatis and N gonorrhoeae.12,13 Testing for M genitalium can be considered for women with PID.1 

PID is considered a polymicrobial infection, and other pathogens including Ureaplasma species, M hominis, and constituents of the vaginal and enteric floramay also play a role. However, testing these additional pathogens has limited value in diagnosing PID.1 

Quest offers a PID panel (test code 36965) that includes NAATs for 4 of the most common causes of urogenital inflammation: C trachomatis, N gonorrhoeae, T vaginalis, and M genitalium.

Follow-up testing

Guidelines indicate that test-of-cure (TOC) is unnecessary in most individuals with uncomplicated infection of C trachomatis, N gonorrhoeae, T vaginalis, or M genitalium.1 However, NAATs can be used for C trachomatis or N gonorrhoeae TOC if needed (Table 6).1 Because NAATs can detect dead organisms, NAATs for C trachomatis TOC should be performed at least 3 weeks after treatment and NAATs for N gonorrhoeae TOC should be performed at least 2 weeks after treatment.14 Culture (test code 480) is recommended to test N gonorrhoeae for antimicrobial susceptibility in patients with positive NAAT results, persistent symptoms, or treatment failure.1

Table 6. Follow-up Recommendations for Specific Diagnosis of Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis, or M genitaliuma [return to contents]

Diagnosis

Test of cure1 

Testing for reinfection1 

C trachomatis

Not recommended except for

  • Pregnant individuals 4 weeks after treatment

3 months after treatment

N gonorrhoeae

Not recommended except for

  • Patients with pharyngeal gonorrhea 7-14 days after treatment
  • Patients with suspected treatment failure 7-14 days after retreatment

3 months after treatment

T vaginalis

No recommendations

3 months after treatment

M genitalium

Not recommended in asymptomatic individuals

No recommendations

TOC, test of cure.
a This is not intended as a comprehensive list of testing recommendations. Refer to guidelines for all current recommendations.

 

Reinfection from an untreated or new infected partner after treatment is common. Therefore, retesting 3 months after treatment is recommended for patients following a specific diagnosis of C trachomatisN gonorrhoeae, or T vaginalis.1 

Sex partner testing

All sex partners of patients with the diagnosis of C trachomatis, N gonorrhoeae, or T vaginalis infection should be tested if sexual contact with the patient occurs within 60 days preceding the patient’s diagnosis or symptom onset (Table 7).1  However, when sex partners of patients are unlikely or unable to be tested, expedited partner therapy (EPT) can be considered.1 

Table 7. Sex Partner Testing Recommendations for Specific Diagnosis of Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis, or M genitaliuma [return to contents]

Diagnosis

Sex partners testing1 

EPT1,b

C trachomatis

Test all sex partners

Applicable

N gonorrhoeae

Test all sex partners

Applicable

T vaginalis

Test all sex partners

Applicablec

M genitalium

Test sex partners of symptomatic patients

Not applicable

EPT, expedited partner therapy.
a This is not intended as a comprehensive list of testing recommendations. Refer to guidelines for all current recommendations.
b EPT permission status varies among different states.1 
c EPT has not been demonstrated to reduce reinfection in patients with trichomoniasis.1 

 

References [return to contents]

  1. Workowski KA, Bachmann LH, Chan PA, et al. Sexually transmitted infections treatment guidelines, 2021. MMWR Recomm Rep. 2021;70(4):1-187. doi:10.15585/mmwr.rr7004a1
  2. Manhart LE, Holmes KK, Hughes JP, et al. Mycoplasma genitalium among young adults in the United States: an emerging sexually transmitted infection. Am J Public Heal. 2011;97(6):1118-1125. doi:10.2105/ajph.2005.074062
  3. Huppert JS, Mortensen JE, Reed JL, et al. Mycoplasma genitalium detected by transcription-mediated amplification is associated with Chlamydia trachomatis in adolescent women. Sex Transm Dis. 2008;35(3):250-254. doi:10.1097/olq.0b013e31815abac6
  4. Whiley DM, Tapsall JW, Sloots TP. Nucleic acid amplification testing for Neisseria gonorrhoeae: an ongoing challenge. J Mol Diagn. 2006;8(1):3-15. doi:10.2353/jmoldx.2006.050045
  5. US Preventive Services Task Force. Screening for chlamydia and gonorrhea: US Preventive Services Task Force recommendation statement. JAMA. 2021;326(10):949-956. doi:10.1001/jama.2021.14081
  6. Miller JM, Binnicker MJ, Campbell S, et al. Guide to utilization of the microbiology laboratory for diagnosis of infectious diseases: 2024 update by the Infectious Diseases Society of America (IDSA) and the American Society for Microbiology (ASM). Clin Infect Dis. Published 2024:ciae104. doi:10.1093/cid/ciae104
  7. Bachmann LH, Manhart LE, Martin DH, et al. Advances in the understanding and treatment of male urethritis. Clin Infect Dis. 2015;61(suppl_8):S763-S769. doi:10.1093/cid/civ755
  8. Kissinger P. Epidemiology and treatment of trichomoniasis. Curr Infect Dis Rep. 2015;17(6):31. doi:10.1007/s11908-015-0484-7
  9. Lusk MJ, Konecny P. Cervicitis: a review. Curr Opin Intern Med. 2008;7(2):142-148. doi:10.1097/qco.0b013e3282f3d988
  10. Marrazzo JM, Martin DH. Management of women with cervicitis. Clin Infect Dis. 2007;44(Supplement_3):S102-S110. doi:10.1086/511423
  11. Meites E, Gaydos CA, Hobbs MM, et al. A review of evidence-based care of symptomatic trichomoniasis and asymptomatic Trichomonas vaginalis infections. Clin Infect Dis. 2015;61(suppl_8):S837-S848. doi:10.1093/cid/civ738
  12. Brunham RC, Gottlieb SL, Paavonen J. Pelvic inflammatory disease. N Engl J Med. 2015;372(21):2039-2048. doi:10.1056/nejmra1411426
  13. Haggerty CL, Taylor BD. Mycoplasma genitalium: an emerging cause of pelvic inflammatory disease. Infect Dis Obstet Gynecol. 2011;2011(1):959816. doi:10.1155/2011/959816
  14. Papp JR, Schachter J, Gaydos CA, et al. Recommendations for the laboratory-based detection of Chlamydia trachomatis and Neisseria gonorrhoeae—2014. MMWR Recomm Rep: Morb Mortal Wkly Rep Recomm Rep. 2014;63(RR-02):1-19.
     

Content reviewed 11/2025

top of page

This Clinical Focus covers laboratory tests that help diagnose, screen for, and manage sexually transmitted infections associated with urethritis, cervicitis, and PID.

Sexually Transmitted Infections Associated With Urethritis, Cervicitis, and PID: Laboratory Testing for Screening, Diagnosis, and Management

Clinical Focus

 

Sexually Transmitted Infections Associated With Urethritis, Cervicitis, and Pelvic Inflammatory Disease

Laboratory Testing for Screening, Diagnosis, and Management

 

Clinical background [return to contents]

Urethritis and cervicitis are inflammatory conditions that are often caused by sexually transmitted infections (STIs) of the urogenital tract. Pelvic inflammatory disease (PID) occurs when pathogens ascend past the cervix and infect the endometrium, fallopian tubes, ovaries, or pelvis. PID is one of the most serious manifestations of untreated STIs.

STIs can be difficult to identify because their signs and symptoms are not specific to the causative pathogen. Therefore, individuals with urethritis, cervicitis, or PID should be tested for common STIs so that they can receive appropriate, timely treatment.1 Since many of these STIs can also be asymptomatic, regular screening to identify STIs can help prevent urethritis, cervicitis, and PID among people at increased risk.1 

Substantial proportions of urethritis, cervicitis, and PID cases are caused by Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis, or Mycoplasma genitalium.1 All 4 of these pathogens are common among young adults in the United States, especially young women at high risk for STIs.2,3 Additional infectious and endogenous pathogens are associated with urogenital tract inflammation, such as Ureaplasma species, Mycoplasma hominis, herpes simplex virus (HSV), and constituents of the vaginal flora.1 

The Centers for Disease Control and Prevention (CDC) provides testing recommendations for STIs commonly associated with urethritis, cervicitis, and PID (Table 1).1 Testing for certain comorbid STIs is indicated for individuals with a diagnosis of urethritis, cervicitis, or PID. For testing options for these STIs, see

Table 1. Testing Recommendations for STIs Commonly Associated With Urethritis, Cervicitis, and PIDa [return to contents]

Condition

Testing recommendations to identify causative STIs1 

Additional testing recommendations for patients with the indicated diagnosis1 

CT/NG

T vaginalis

M genitalium

Bacterial vaginosis

HIV and/or Syphilis

Urethritis

  • Recommended
  • Considered in high-prevalence settings, when a partner is infected, or for persistent or recurrent disease
  • Recommended for persistent or recurrent disease

N/A

  • Recommended

Cervicitis

  • Recommended
  • Recommended
  • Considered based on clinical presentation
  • Recommended for persistent or recurrent disease
  • Recommended
  • Recommended

PID

  • Recommended
  • Not recommended
  • Considered based on clinical presentation
  • Not recommended
  • Recommended
CT/NG, C trachomatis/N gonorrhoeae; N/A, not applicable; PID, pelvic inflammatory disease.
a This is not intended as a comprehensive list of testing recommendations. Refer to guidelines for all current recommendations.

 

This Clinical Focus provides an overview of laboratory tests useful in screening, diagnosis, and management of STIs commonly associated with urethritis, cervicitis, and PID. This information is not intended as medical advice. Test selection and interpretation, diagnosis, and patient management decisions should be based on the physician’s education, clinical expertise, and assessment of the patient.

Individuals suitable for testing [return to contents]

  • Individuals who should be screened for C trachomatis, N gonorrhoeae, or T vaginalis infections (see Screening subsection)
  • Individuals with urethritis, cervicitis, or PID (see Diagnosis subsection)
  • Individuals with confirmed C trachomatis, N gonorrhoeae, T vaginalis, or M genitalium infections (see Follow-up testing subsection)

Test availability [return to contents]

To aid with screening, diagnosis, and management, Quest Diagnostics offers panels of nucleic acid amplification tests (NAATs) that concurrently test for common infectious causes of urethritis, cervicitis, and PID (Table 2). In addition, Quest offers tests for individual microorganisms from various specimen types, confirmatory testing using alternative gene targets,4 tests and panels targeting genital mycoplasmas, and STI panels for individuals at high risk (Table 3).

Table 2. NAAT Panels for Identifying the Cause(s) of Urethritis, Cervicitis, and PIDa [return to contents]

Test code

Test name (component tests and codes)

C trachomatis

N gonorrhoeae

T vaginalis

M genitalium

Ureaplasma species

36962

Sexually-Transmitted Infections (STIs) Cervicitis Panelb

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA (19550), and Mycoplasma genitalium, rRNA, TMA (91475).

 

38288

Sexually-Transmitted Infections (STIs) Male Urethritis Panel, Expandedb,c,d

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA, males (90801), Mycoplasma genitalium, rRNA, TMA (91475), and SureSwab® Ureaplasma species, real-time PCR (91476).

36964

Sexually-Transmitted Infections (STIs) Male Urethritis Panelb,c

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA, males (90801), and Mycoplasma genitalium, rRNA, TMA (91475).

 

36965

Sexually-Transmitted Infections (STIs) Pelvic Inflammatory Disease(PID) Panelb

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA (19550), and Mycoplasma genitalium, rRNA, TMA(91475).

 

NAAT, nucleic acid amplification test; PID, pelvic inflammatory disease; STI, sexually transmitted infections; TMA, transcription-mediated amplification.
a This test listing is not intended to be comprehensive. For additional testing options, consult TestDirectory.QuestDiagnostics.com.
b Panel components may be ordered separately.
c The analytical performance characteristics of this assay have been determined by Quest Diagnostics. The modifications have not been cleared or approved by the FDA. This assay has been validated pursuant to the CLIA regulations and is used for clinical purposes.
d This test was developed and its analytical performance characteristics have been determined by Quest Diagnostics. It has not been cleared or approved by FDA. This assay has been validated pursuant to the CLIA regulations and is used for clinical purposes.

 

Table 3. Individual Laboratory Tests and Panels for STIs Commonly Associated With Urethritis, Cervicitis, and PIDa [return to contents]

Test code

Test name (component tests and test codes)

Clinical use

Chlamydia trachomatis

16505

Chlamydia trachomatis RNA, TMA, Rectalb

Detect infection with C trachomatis

70048

Chlamydia trachomatis RNA, TMA, Throatb

11361

Chlamydia trachomatis RNA, TMA, Urogenital

91046

Chlamydia trachomatis, TMA (Alternate Target), Rectalc

15031

Chlamydia trachomatis, TMA (Alternate Target), Urogenital

Neisseria gonorrhoeae

480

Neisseria gonorrhoeae (GC) Culture

Detect infection with N gonorrhoeae

16504

Neisseria gonorrhoeae RNA, TMA, Rectalb

70049

Neisseria gonorrhoeae RNA, TMA, Throatb

11362

Neisseria gonorrhoeae RNA, TMA, Urogenital

90990

Neisseria gonorrhoeae, TMA (Alternate Target), Rectalc

15033

Neisseria gonorrhoeae, TMA (Alternate Target), Urogenital

Trichomonas vaginalis

19550

Trichomonas vaginalis RNA, Qualitative, TMA

Detect infection with T vaginalis

90801

Trichomonas vaginalis RNA, Qualitative, TMA, Malesb

90521

Trichomonas vaginalis RNA, Qualitative, TMA, Pap Vial

Genital mycoplasmas

91475

Mycoplasma genitalium, rRNA, TMA

Detect infection with M genitalium

91477

Mycoplasma/Ureaplasma Panel, PCRc,d

Includes Mycoplasma genitalium, rRNA, TMA(91475), SureSwab®, Mycoplasma hominis, real-time PCR (91474), and SureSwab®, Ureaplasma species, real-time PCR (91476).c

Detect infection with M genitalium, M hominis, U urealyticum, or U parvum

STI Panels

11363

Chlamydia/Neisseria gonorrhoeae RNA, TMA, Urogenital

Detect infections with C trachomatis and N gonorrhoeae; screen individuals at increased risk for C trachomatis and N gonorrhoeae

91773

Chlamydia/Neisseria gonorrhoeae RNA, TMA with Reflex to Alternate Target, Urogenitale

Includes reflex to Chlamydia trachomatis, TMA (Alternate Target), urogenital (15031) and Neisseria gonorrhoeae, TMA (alternate target), urogenital (15033).

Detect infections with C trachomatis and N gonorrhoeae followed by confirmatory testing for positive results

36963

Sexually-Transmitted Infections (STIs) Increased Risk Paneld

Includes Chlamydia/Neisseria gonorrhoeae RNA, TMA, Urogenital (11363), Trichomonas vaginalis RNA, qualitative, TMA (19550), and Mycoplasma genitalium, rRNA, TMA(91475).

Detect common STIs in individuals at increased risk

PCR, polymerase chain reaction; STI, sexually transmitted infections; TMA, transcription-mediated amplification.
a This test listing is not intended to be comprehensive. For additional testing options, consult TestDirectory.QuestDiagnostics.com.
b The analytical performance characteristics of this assay have been determined by Quest Diagnostics. The modifications have not been cleared or approved by the FDA. This assay has been validated pursuant to the CLIA regulations and is used for clinical purposes.
c This test was developed and its analytical performance characteristics have been determined by Quest Diagnostics. It has not been cleared or approved by FDA. This assay has been validated pursuant to the CLIA regulations and is used for clinical purposes.
d Panel components may be ordered separately.
e Reflex tests are performed at an additional charge and are associated with an additional CPT® code.

Test Selection and Interpretation [return to contents]

Screening

Timely detection and effective treatment of asymptomatic STIs that can cause urethritis and cervicitis are important for preventing PID and other complications. Therefore, the CDC, the United States Preventive Services Task Force (USPSTF), the Infectious Diseases Society of America (IDSA), and the American Society for Microbiology (ASM) have screening recommendations for STIs commonly associated with urethritis, cervicitis, and PID in appropriate populations (Table 4 and 5).1,5,6 Screening recommendations should be adapted based on anatomy and reported sexual behaviors.1,5 

Table 4. Screening Guidelines for Chlamydia and Gonorrheaa [return to contents]

Population

Screening interval1,5,6,b

Sexually active women

 

 

<25 years of age

Yearly

 

≥25 years of age with risk factors:

  • New sex partner
  • >1 sex partner
  • Sex partner with concurrent partners
  • Sex partner with an STI
  • Inconsistent condom use when not in mutually monogamous relationship
  • Previous or current STI
  • History of transactional sex
  • History of incarceration

Yearly

Pregnant individuals <25 years of age or ≥25 years of age with risk factors

1st prenatal visit and 3rd trimester

Sexually active MSM

Yearly, every 3-6 months if high risk

Sexually active individuals with HIV

At initial HIV-related visit, then yearly

Women <35 and men <30 years of age in correctional facilities

At intake

MSM, men who have sex with men; STI, sexually transmitted infection.
a This is not intended as a comprehensive list of screening recommendations. Refer to guidelines for all current recommendations.
b More frequent screening may be appropriate for some people.1 

 

Table 5. Screening Guidelines for Trichomoniasisa [return to contents]

Population

Screening interval1,5 

Sexually active women with HIV

At initial HIV-related visit, then yearly

Women <35 of age in correctional facilities

At intake

a This is not intended as a comprehensive list of screening recommendations. Refer to guidelines for all current recommendations.

 

In high-prevalence settings, screening sexually active young men for C trachomatis can be considered.1 Quest offers individual NAATs for screening for C trachomatis (test code 11361) and N gonorrhoeae individually (test code 11362) or concurrent CT/NG NAAT screening for both organisms (test code 11363).

Screening for trichomoniasis can be considered for women at high risk for infection and for individuals in high-prevalence settings.1 Quest offers NAATs for screening for trichomoniasis (test codes 19550, 90801, and 90521).

Currently, routine screening for M genitalium is not recommended. However, testing may be warranted depending on the clinical presentation, such as persistent urethritis.

Diagnosis

Individuals with urethritis, cervicitis, or PID should be tested for causative pathogens and other common STIs.1 Identifying a causative pathogen helps inform treatment decisions and prevent complications, recurrent disease, and STI transmission.1

The CDC, the USPSTF, the IDSA, and the ASM recommend NAATs to detect C trachomatis and N gonorrhoeae in urogenital and extragenital specimens.1,5,6 Both the CDC and IDSA prefer NAATs for detecting M genitalium because isolating this pathogen by culture is prohibitively difficult.1,6 The CDC recommends highly sensitive and specific diagnostic tests to detect T vaginalis.1 NAATs for T vaginalis can also be performed using the same specimen that is collected for C trachomatis and N gonorrhoeae testing.6 Quest offers diagnostic NAATs to detect C trachomatis, N gonorrhoeae, T vaginalis, and M genitalium from various types of specimens (Table 3).

Positive results from NAATs indicate infection with the specified organism, while negative results indicate that the organism was not detected. False-positive results may occur from performing NAAT too soon after cessation of therapy owing to the presence of nucleic acids from dead organisms. False-negative results could occur when there are too few organisms in the specimen, below the assay detection limit.

Urethritis

The CDC recommends testing men with clinical signs of urethritis for both C trachomatis and N gonorrhoeae.1 Urethritis is conventionally divided into gonococcal and non-gonococcal urethritis (NGU) based on point-of-care Gram-stain microscopy, which can identify urethral inflammation. Microscopy is highly specific for gonococcal urethritis based on visualization of N gonorrhoeae organisms.1 However, if microscopy is not available or if a diagnosis of NGU is made, NAATs should be used to test for C trachomatis and N gonorrhoeae (Table 3).1 

In high-prevalence settings, testing for T vaginalis should also be considered; in low-prevalence settings, testing for T vaginalis (test code 90801) may be appropriate if symptoms persist after treatment or if specific exposure is suspected.1 M genitalium can also cause urethritis and is a common reason for the failure of presumptive treatment for NGU. In cases of persistent or recurrent urethritis, CDC guidelines recommend testing for M genitalium infection (test code 91475).1 

Guidelines indicate that men may be tested for other bacterial and viral causes of urethritis if symptoms persist after treatment, or if exposure to a specific pathogen is suspected.1 Although genital mycoplasmas have long been associated with urethritis, evidence that Ureaplasma species and M hominis are pathogenic has been mixed.1 HSV-1 and HSV-2 can also cause urogenital inflammation; 15% to 30% of men with primary HSV infections develop urethritis.7 While urethritis caused by HSV can usually be distinguished by the presence of characteristic skin lesions, HSV can also cause urethritis in the absence of these lesions.

Quest offers a urethritis panel (test code 36964) that includes NAATs for 4 of the most common causes of urogenital inflammation: C trachomatis, N gonorrhoeae, T vaginalis, and M genitalium. An additional urethritis panel (test code 38288) allows for testing these STIs in combination with Ureaplasma species. Separate NAATs are also available for detecting genital mycoplasmas (Table 3).

For HSV-1 and HSV-2 testing options, refer to Genital Herpes: Laboratory Support of Diagnosis and Management | Clinical Focus | Quest Diagnostics.

Cervicitis

Guidelines indicate that women with cervicitis should be tested for N gonorrhoeae, C trachomatis, and T vaginalis.1 C trachomatis and N gonorrhoeae are well-known causes of cervicitis. T vaginalis is usually associated with vaginal symptoms, but up to 50% of women with T vaginalis infection also develop characteristic cervical inflammation (colpitis macularis).8 Accumulating evidence also suggests that M genitalium can cause cervicitis.1,9 Testing for M genitalium can be considered, and in cases of persistent or recurrent cervicitis, it is recommended.1 

Other bacteria and viruses may cause cervicitis.1 Ureaplasma species and M hominis have been associated with cervicitis, but they can also be found in the reproductive tract of healthy women.9 Whether these organisms cause inflammation independent of bacterial vaginosis or concurrent infections has not been resolved. Thus, testing for Ureaplasma species and M hominis is not recommended.1 Both HSV-1 and HSV-2 are also associated with cervicitis,9 and 15% to 20% of women with primary HSV-2 infections develop cervicitis.10 However, guidelines do not indicate HSV testing.1 

Quest offers a cervicitis panel (test code 36962) that includes NAATs for 4 of the most common causes of urogenital inflammation: C trachomatis, N gonorrhoeae, T vaginalis, and M genitalium.

Pelvic inflammatory disease

Guidelines indicate that women with suspected PID should be given empiric therapy but should also be tested for C trachomatis and N gonorrhoeae to help direct pathogen-specific follow-up testing and care.1 Importantly, confirming a C trachomatis or N gonorrhoeae infection increases the specificity of a PID diagnosis, which is otherwise based on minimal criteria to reduce the number of missed cases.1 

T vaginalis has been associated with PID in several studies.11 At present, however, a causal relationship has not been established11 and guidelines do not indicate T vaginalis testing for women with PID.1 Several prospective studies have indicated associations between M genitalium and PID independent of C trachomatis and N gonorrhoeae.12,13 Testing for M genitalium can be considered for women with PID.1 

PID is considered a polymicrobial infection, and other pathogens including Ureaplasma species, M hominis, and constituents of the vaginal and enteric floramay also play a role. However, testing these additional pathogens has limited value in diagnosing PID.1 

Quest offers a PID panel (test code 36965) that includes NAATs for 4 of the most common causes of urogenital inflammation: C trachomatis, N gonorrhoeae, T vaginalis, and M genitalium.

Follow-up testing

Guidelines indicate that test-of-cure (TOC) is unnecessary in most individuals with uncomplicated infection of C trachomatis, N gonorrhoeae, T vaginalis, or M genitalium.1 However, NAATs can be used for C trachomatis or N gonorrhoeae TOC if needed (Table 6).1 Because NAATs can detect dead organisms, NAATs for C trachomatis TOC should be performed at least 3 weeks after treatment and NAATs for N gonorrhoeae TOC should be performed at least 2 weeks after treatment.14 Culture (test code 480) is recommended to test N gonorrhoeae for antimicrobial susceptibility in patients with positive NAAT results, persistent symptoms, or treatment failure.1

Table 6. Follow-up Recommendations for Specific Diagnosis of Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis, or M genitaliuma [return to contents]

Diagnosis

Test of cure1 

Testing for reinfection1 

C trachomatis

Not recommended except for

  • Pregnant individuals 4 weeks after treatment

3 months after treatment

N gonorrhoeae

Not recommended except for

  • Patients with pharyngeal gonorrhea 7-14 days after treatment
  • Patients with suspected treatment failure 7-14 days after retreatment

3 months after treatment

T vaginalis

No recommendations

3 months after treatment

M genitalium

Not recommended in asymptomatic individuals

No recommendations

TOC, test of cure.
a This is not intended as a comprehensive list of testing recommendations. Refer to guidelines for all current recommendations.

 

Reinfection from an untreated or new infected partner after treatment is common. Therefore, retesting 3 months after treatment is recommended for patients following a specific diagnosis of C trachomatisN gonorrhoeae, or T vaginalis.1 

Sex partner testing

All sex partners of patients with the diagnosis of C trachomatis, N gonorrhoeae, or T vaginalis infection should be tested if sexual contact with the patient occurs within 60 days preceding the patient’s diagnosis or symptom onset (Table 7).1  However, when sex partners of patients are unlikely or unable to be tested, expedited partner therapy (EPT) can be considered.1 

Table 7. Sex Partner Testing Recommendations for Specific Diagnosis of Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis, or M genitaliuma [return to contents]

Diagnosis

Sex partners testing1 

EPT1,b

C trachomatis

Test all sex partners

Applicable

N gonorrhoeae

Test all sex partners

Applicable

T vaginalis

Test all sex partners

Applicablec

M genitalium

Test sex partners of symptomatic patients

Not applicable

EPT, expedited partner therapy.
a This is not intended as a comprehensive list of testing recommendations. Refer to guidelines for all current recommendations.
b EPT permission status varies among different states.1 
c EPT has not been demonstrated to reduce reinfection in patients with trichomoniasis.1 

 

References [return to contents]

  1. Workowski KA, Bachmann LH, Chan PA, et al. Sexually transmitted infections treatment guidelines, 2021. MMWR Recomm Rep. 2021;70(4):1-187. doi:10.15585/mmwr.rr7004a1
  2. Manhart LE, Holmes KK, Hughes JP, et al. Mycoplasma genitalium among young adults in the United States: an emerging sexually transmitted infection. Am J Public Heal. 2011;97(6):1118-1125. doi:10.2105/ajph.2005.074062
  3. Huppert JS, Mortensen JE, Reed JL, et al. Mycoplasma genitalium detected by transcription-mediated amplification is associated with Chlamydia trachomatis in adolescent women. Sex Transm Dis. 2008;35(3):250-254. doi:10.1097/olq.0b013e31815abac6
  4. Whiley DM, Tapsall JW, Sloots TP. Nucleic acid amplification testing for Neisseria gonorrhoeae: an ongoing challenge. J Mol Diagn. 2006;8(1):3-15. doi:10.2353/jmoldx.2006.050045
  5. US Preventive Services Task Force. Screening for chlamydia and gonorrhea: US Preventive Services Task Force recommendation statement. JAMA. 2021;326(10):949-956. doi:10.1001/jama.2021.14081
  6. Miller JM, Binnicker MJ, Campbell S, et al. Guide to utilization of the microbiology laboratory for diagnosis of infectious diseases: 2024 update by the Infectious Diseases Society of America (IDSA) and the American Society for Microbiology (ASM). Clin Infect Dis. Published 2024:ciae104. doi:10.1093/cid/ciae104
  7. Bachmann LH, Manhart LE, Martin DH, et al. Advances in the understanding and treatment of male urethritis. Clin Infect Dis. 2015;61(suppl_8):S763-S769. doi:10.1093/cid/civ755
  8. Kissinger P. Epidemiology and treatment of trichomoniasis. Curr Infect Dis Rep. 2015;17(6):31. doi:10.1007/s11908-015-0484-7
  9. Lusk MJ, Konecny P. Cervicitis: a review. Curr Opin Intern Med. 2008;7(2):142-148. doi:10.1097/qco.0b013e3282f3d988
  10. Marrazzo JM, Martin DH. Management of women with cervicitis. Clin Infect Dis. 2007;44(Supplement_3):S102-S110. doi:10.1086/511423
  11. Meites E, Gaydos CA, Hobbs MM, et al. A review of evidence-based care of symptomatic trichomoniasis and asymptomatic Trichomonas vaginalis infections. Clin Infect Dis. 2015;61(suppl_8):S837-S848. doi:10.1093/cid/civ738
  12. Brunham RC, Gottlieb SL, Paavonen J. Pelvic inflammatory disease. N Engl J Med. 2015;372(21):2039-2048. doi:10.1056/nejmra1411426
  13. Haggerty CL, Taylor BD. Mycoplasma genitalium: an emerging cause of pelvic inflammatory disease. Infect Dis Obstet Gynecol. 2011;2011(1):959816. doi:10.1155/2011/959816
  14. Papp JR, Schachter J, Gaydos CA, et al. Recommendations for the laboratory-based detection of Chlamydia trachomatis and Neisseria gonorrhoeae—2014. MMWR Recomm Rep: Morb Mortal Wkly Rep Recomm Rep. 2014;63(RR-02):1-19.
     

Content reviewed 11/2025

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Reference ranges are provided as general guidance only. To interpret test results use the reference range in the laboratory report.

The tests listed by specialty and category are a select group of tests offered. For a complete list of Quest Diagnostics tests, please adjust the filter options chosen, or refer to our Directory of Services.